The 3-D Organization Of The Human Genome
Insights into the genomics of the human nucleolus have been revealed in a study by researchers from the University of Regensburg and the Ludwig Maximilians University in Germany and the Centro de Investigación PrÃncipe Felipe in Spain. The research, published March 26 in the open-access journal PLoS Genetics, sheds new light on the functional organization of human genetic material.
One major challenge of the post-genomic era is to understand how the genome is organized inside the cell’s nucleus to fulfill the dynamics and regulation of DNA access to regulatory factors. Previous studies on the nuclear architecture of the cell suggest that the three-dimensional structure of genomic information is non-random. However, few discrete genomic loci have been analyzed for their spatial location, prompting the current study.
The researchers, led by Attila Németh and Gernot Längst, examined the DNA network of the nucleolus, the nucleus’ largest sub-compartment, using sequencing, microarray analysis, and single-cell analysis. The work resulted in a high-resolution sequence map of this nuclear structure, detailing the position of the several thousand genes and non-coding sequences that form the nucleolus within the three-dimensional space of the nucleus.
"The results help us understand how nuclear information is packaged into functional compartments of the nucleus," say the authors. At the same time, the authors emphasize that this research was confined to just two cell types, and that further studies are needed to address the conservation of these packaging mechanisms during evolution, and to monitor the developmental dynamics of three-dimensional genome organization.
FINANCIAL DISCLOSURE: GL and TC are supported by the Deutsche Forschungsgemeinschaft (DFG); GL by the Bayerisches Genomforschungsnetzwerk (BayGene); AN and GL by the University of Regensburg – DFG Anschubfinanzierung; and AC, DM, IM, JS-L, and JD by grants from project BIO BIO2008-04212 from the Spanish Ministry of Science and Innovation (MICINN) and grant (RD06/0020/1019) from Red Temática de Investigación Cooperativa en Cáncer (RTICC), Instituto de Salud Carlos III (ISCIII), MICINN. The National Institute of Bioinformatics (www.inab.org) is a platform of Genoma Espana. The CIBER de enfermedades raras is an initiative of the ISCIII. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
COMPETING INTERESTS: The authors have declared that no competing interests exist.
CITATION: Németh A, Conesa A, Santoyo-Lopez J, Medina I, Montaner D, et al. (2010) Initial Genomics of the Human Nucleolus. PLoS Genet 6(3): e1000889. doi:10.1371/journal.pgen.1000889
Image Courtesy Jeff Johnson
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