September 4, 2009
Google Algorithm Detects Critical Species
Google's algorithm for ranking web-pages can be used to determine which species are critical for sustaining ecosystems. Drs. Stefano Allesina and Mercedes Pascual find that "PageRank" can be applied to the study of food webs, the complex networks describing who eats whom in an ecosystem.
The researchers, based at the National Center for Ecological Analysis and Synthesis at the University of California, Santa Barbara and at the University of Michigan, therefore adapt Google's PageRank algorithm, which efficiently ranks web-pages according to search criteria, for ecological purposes. Details are published September 4 in the open-access journal PLoS Computational Biology.
Using the PageRank method, Allesina and Pascual identify the set of species which are most critical for maintaining ecosystem functioning. The method identifies the species of maximum importance by determining which extinctions lead to the fastest ecosystem collapse.
PageRank assigns importance to web-pages according to the rule "a page is important if important pages point to it". This circular method of ranking, which can be solved through a clever application of college-level algebra, is key to the process of identifying critical species. Although this approach would seem inappropriate, as food webs are not truly circular, the authors introduce an ecologically-sound way to make food webs circular by adding an artificial species, representing the recycling of nutrients from all dead organisms back towards the plants that form the base of food webs.
The authors hope that this method will be applied far beyond ecology to solve critical problems in other network-related biological fields, such as in protein interaction and gene regulation.
FINANCIAL DISCLOSURE: This work was supported by a Centennial Fellowship of the James S. McDonnell Foundation to MP and by NSF grant EF-0827493. SA is a postdoctoral fellow at the National Center for Ecological Analysis and Synthesis, funded by NSF DEB 0553768, the University of California, Santa Barbara, and the State of California. MP is a Howard Hughes Medical Investigator. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
COMPETING INTERESTS: The authors have declared that no competing interests exist.
CITATION: Allesina S, Pascual M (2009) Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions? PLoS Comput Biol 5(9): e1000494. doi:10.1371/journal.pcbi.1000494
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